Release 57
(Aug 26, 2025)

Whole genome analysis for QTL/association enrichment

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Version: Enrich S: beta v0.8
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Data:

Number of texture traits:25
Number of QTL / associations found:1,742
Number of chromosomes where QTL / associations are found:19

Chi-squared (χ2) test: are texture traits over-represented on some chromosomes?

Chromosomes Total χ2 df p-values FDR * Size of χ2
Chromosome X2096.46800189e-411.005882e-40
Chromosome 1187988.83325189e-411.005882e-40
Chromosome 214970.92275189e-411.005882e-40
Chromosome 31071.42500183.76247e-2161.021242e-215
Chromosome 4845.49225186.532575e-1681.241189e-167
Chromosome 5971.32450189.373834e-1951.978921e-194
Chromosome 637.22575180.0048968415.168888e-03
Chromosome 71004.14600189.121002e-2022.166238e-201
Chromosome 81401.17525187.976641e-2877.577809e-286
Chromosome 91249.16600183.249675e-2542.058128e-253
Chromosome 101401.17525187.976641e-2877.577809e-286
Chromosome 112048.92225189e-411.005882e-40
Chromosome 121212.52725182.315175e-2461.099708e-245
Chromosome 131071.42500183.76247e-2161.021242e-215
Chromosome 141176.43350181.251488e-2384.755654e-238
Chromosome 150.12775180.9983293258231159.983293e-01
Chromosome 161731.37050189e-411.005882e-40
Chromosome 171520.90825189e-411.005882e-40
Chromosome 181688.18725189e-411.005882e-40

Chi-squared (χ2) test: Which of the 25 texture traits are over-represented in the QTLdb

Traits Total χ2 df p-values FDR * Size of χ2
Average instron (star probe) force 106.76686 24 2.060102e-12 6.437819e-12
Carcass temperature 75.54573 24 3.067155e-07 5.898375e-07
Connective tissue amount 51.12143 24 0.001017134 1.271418e-03
Cooking loss 224.24314 24 1.977126e-34 9.885630e-34
Cooking yield 89.85388 24 1.524098e-09 3.810245e-09
Cooling loss 463.93723 24 4.975974e-83 1.243993e-81
Drip loss 334.00826 24 2.234956e-56 1.862463e-55
Fiber type I myosin isoform percentage 86.10002 24 6.30995e-09 1.314573e-08
Fiber type II myosin isoform ratio 8.68712 24 0.9981916 9.999969e-01
Firmness 63.17096 24 2.24861e-05 3.747683e-05
Lactate / diameter of white fibers 55.19356 24 0.0002947738 3.878603e-04
Myofibril fragmentation index 155.2766 24 3.444359e-21 1.435150e-20
Number of white fibers 55.19356 24 0.0002947738 3.878603e-04
Pale, soft, and exudative meat 49.01507 24 0.001886002 2.245240e-03
R-value 56.13126 24 0.0002199243 3.436317e-04
R-value / diameter of white fibers 55.19356 24 0.0002947738 3.878603e-04
Sarcomere length 243.84678 24 2.727906e-38 1.704941e-37
Shear firmness 4.34358 24 0.9999969 9.999969e-01
Shear force 423.34576 24 1.19085e-74 1.488562e-73
Shear force at first peak 88.5004 24 2.549282e-09 5.793823e-09
Tenderness score 117.13289 24 3.135018e-14 1.119649e-13
Thawing loss 97.33417 24 8.525338e-11 2.368149e-10
Total shear work 41.70817 24 0.01391010 1.580693e-02
Water holding capacity 71.58199 24 1.256157e-06 2.243138e-06
chew score 37.80865 24 0.03626884 3.942265e-02

Correlations found between some of these traits for your reference

No correlation data found on these traits

Overall Test

Data Chi'Square Test Fisher's Exact Test
Number of chrom.:19 χ2=223487.255750
Number of traits:25 df=432
Number of QTLs:1,742 p-value=0

FOOT NOTE: * : FDR is short for "false discovery rate", representing the expected proportion of type I errors. A type I error is where you incorrectly reject the null hypothesis, i.e. you get a false positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where V = Number of Type I errors (false positives); R = Number of rejected hypotheses. Benjamini–Hochberg procedure is a practical way to estimate FDR.

 

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