| QTL Map Information |
|---|
| Chromosome: | 21 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs367390391 |
| Peak: | |
| Lower, "Significant": | rs367458520 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
VARIANCE | 6.6% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | The rainbow trout used in the GWAS included 100 pedigreed full-sib (FS) families from year-class (YC) 2016 of the commercial breeding company Clear Springs Foods, Inc. (CSF). These 100 FS families included 41 paternal halfsib (HS) families and four maternal HS families and were generated using 78 sires and 98 dams. |
| Breeds associated:
n/a
|
| Design: | Fish were genotyped using the Affymetrix Rainbow Trout 57K SNP array and analyzed for resistance to infections hematopoietic necrosis virus. A total of 35,397 SNPs were used for analysis. |
| Analysis: | GWAS was performed using weighted single-step GBLUP and single-step Bayesian multiple regression methods. |
| Software: | BLUPF90, GIBBS2F90, THRGIBBS1F90 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Vallejo RL, Cheng H, Fragomeni BO, Shewbridge KL, Gao G, MacMillan JR, Towner R, Palti Y |
| Affiliation: | National Center for Cool and Cold Water Aquaculture, Agricultural Research Service, United States Department of Agriculture, Kearneysville, WV, USA |
| Title: | Genome-wide association analysis and accuracy of genome-enabled breeding value predictions for resistance to infectious hematopoietic necrosis virus in a commercial rainbow trout breeding population |
| Journal: | Genetics, Selection, Evolution : GSE, 2019, 51(1): 47 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
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| Comments: | wssGBLUP |
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