Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of growth traits:
16
Number of QTL / associations found:
2,397
Number of chromosomes where QTL / associations are found:
27
Chi-squared (χ2) test: are growth traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
665.74112
26
1.093995e-123
2.953787e-123
Chromosome 1
914.21168
26
5.405646e-176
1.459524e-174
Chromosome 2
118018.83248
26
9e-41
1.056522e-40
Chromosome 3
697.76112
26
2.138146e-130
7.216243e-130
Chromosome 4
502.01648
26
1.335396e-89
2.575407e-89
Chromosome 5
428.80496
26
1.605073e-74
2.549234e-74
Chromosome 6
2871.35808
26
9e-41
1.056522e-40
Chromosome 7
12.18416
26
0.9900865
9.999997e-01
Chromosome 8
34.21168
26
0.1297771
1.401593e-01
Chromosome 9
483.17280
26
1.044530e-85
1.762644e-85
Chromosome 10
580.99520
26
5.421548e-106
1.126014e-105
Chromosome 11
123.92384
26
1.016108e-14
1.143122e-14
Chromosome 12
377.68096
26
4.454249e-64
6.329722e-64
Chromosome 13
580.99520
26
5.421548e-106
1.126014e-105
Chromosome 14
299.68352
26
2.442249e-48
3.140034e-48
Chromosome 15
687.82864
26
2.584354e-128
7.753062e-128
Chromosome 16
601.64096
26
2.705794e-110
6.641494e-110
Chromosome 17
4.11408
26
0.9999997
9.999997e-01
Chromosome 18
411.40320
26
5.880474e-71
8.820711e-71
Chromosome 19
329.80112
26
2.205559e-54
2.977505e-54
Chromosome 20
803.67344
26
1.163915e-152
4.489386e-152
Chromosome 21
852.53456
26
5.790161e-163
3.908359e-162
Chromosome 22
827.92384
26
9.006448e-158
4.052902e-157
Chromosome 23
852.53456
26
5.790161e-163
3.908359e-162
Chromosome 24
483.17280
26
1.044530e-85
1.762644e-85
Chromosome 25
852.53456
26
5.790161e-163
3.908359e-162
Chromosome 26
827.92384
26
9.006448e-158
4.052902e-157
Chi-squared (χ2) test: Which of the 16 growth traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at maximum daily gain
52.93126
15
3.958781e-06
4.524321e-06
Average daily gain
170.98675
15
1.548919e-28
1.239135e-27
Body circumference
197.14552
15
8.072011e-34
1.291522e-32
Body depth
70.28425
15
3.975309e-09
5.782268e-09
Body height
127.4765
15
6.624946e-20
1.953438e-19
Body length
111.35506
15
8.854019e-17
2.023776e-16
Body weight
96.76109
15
5.345111e-14
8.552178e-14
Body weight change
59.49671
15
3.077454e-07
3.787636e-07
Body width
104.42268
15
1.882332e-15
3.346368e-15
Hip width
59.62361
15
2.926954e-07
3.787636e-07
Maximum daily gain
107.95454
15
3.978670e-16
7.957340e-16
Shin circumference
152.75093
15
6.850037e-25
2.740015e-24
Tail length
36.23737
15
0.001633574
1.742479e-03
Tail size
3.33854
15
0.999225
9.992250e-01
Total bone
153.69366
15
4.447438e-25
2.371967e-24
bone density
127.25307
15
7.325392e-20
1.953438e-19
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
27
χ2
=
134126.658880
Number of traits:
16
df
=
390
Number of QTLs:
2,397
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
