Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of fleece traits:
7
Number of QTL / associations found:
424
Number of chromosomes where QTL / associations are found:
27
Chi-squared (χ2) test: are fleece traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
96.37166
26
5.111314e-10
2.760110e-09
Chromosome 1
67.39761
26
1.575161e-05
3.866304e-05
Chromosome 2
149.21837
26
2.922049e-19
1.972383e-18
Chromosome 3
23.73014
26
0.591393
9.392712e-01
Chromosome 4
3.25850
26
0.998329325823115
9.999983e-01
Chromosome 5
91.10514
26
3.690598e-09
1.660769e-08
Chromosome 6
4.84337
26
0.9999983
9.999983e-01
Chromosome 7
20.03204
26
0.7900357
9.999983e-01
Chromosome 8
202.16413
26
3.393227e-29
3.053904e-28
Chromosome 9
0.22071
26
0.998329325823115
9.999983e-01
Chromosome 10
9.86223
26
0.9982066
9.999983e-01
Chromosome 11
3.25850
26
0.998329325823115
9.999983e-01
Chromosome 12
587.24666
26
2.705294e-107
7.304294e-106
Chromosome 13
494.18299
26
5.559186e-88
7.504901e-87
Chromosome 14
83.70894
26
5.556384e-08
1.666915e-07
Chromosome 15
14.50141
26
0.9657848
9.999983e-01
Chromosome 16
61.05799
26
0.0001206662
2.714990e-04
Chromosome 17
14.50141
26
0.9657848
9.999983e-01
Chromosome 18
12.50375
26
0.9879578
9.999983e-01
Chromosome 19
71.93774
26
3.450824e-06
9.317225e-06
Chromosome 20
33.76793
26
0.1409675
2.378827e-01
Chromosome 21
51.06976
26
0.002337865
4.508740e-03
Chromosome 22
41.97312
26
0.02470594
4.447069e-02
Chromosome 23
51.06976
26
0.002337865
4.508740e-03
Chromosome 24
83.70894
26
5.556384e-08
1.666915e-07
Chromosome 25
3.25850
26
0.998329325823115
9.999983e-01
Chromosome 26
83.70894
26
5.556384e-08
1.666915e-07
Chi-squared (χ2) test: Which of the 7 fleece traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Clean fleece weight
85.92322
6
2.124965e-16
4.958252e-16
Face wool score
59.13975
6
6.729585e-11
9.421419e-11
Fleece yield
93.53009
6
5.592162e-18
1.957257e-17
Greasy fleece weight
42.06095
6
1.788514e-07
1.788514e-07
Staple length
53.39907
6
9.750343e-10
1.137540e-09
Staple strength
71.93353
6
1.639619e-13
2.869333e-13
Wool crimp
106.8852
6
9.144668e-21
6.401268e-20
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
27
χ2
=
2359.660240
Number of traits:
7
df
=
156
Number of QTLs:
424
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
