Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of fatness traits:
13
Number of QTL / associations found:
616
Number of chromosomes where QTL / associations are found:
28
Chi-squared (χ2) test: are fatness traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome Z
132.95451
27
5.864844e-16
1.172969e-15
Chromosome 1
5221.27268
27
9e-41
5.040000e-40
Chromosome 2
945.45451
27
8.096061e-182
2.266897e-180
Chromosome 3
312.59085
27
2.23304e-50
1.563128e-49
Chromosome 4
340.36366
27
5.986426e-56
5.587331e-55
Chromosome 5
643.50000
27
2.476003e-118
3.466404e-117
Chromosome 6
9.45451
27
0.9992816
9.999980e-01
Chromosome 7
71.50000
27
6.835568e-06
1.063311e-05
Chromosome 8
9.45451
27
0.9992816
9.999980e-01
Chromosome 9
71.50000
27
6.835568e-06
1.063311e-05
Chromosome 10
37.81817
27
0.08077971
1.028105e-01
Chromosome 11
59.09085
27
0.0003466411
4.852975e-04
Chromosome 12
71.50000
27
6.835568e-06
1.063311e-05
Chromosome 13
14.77268
27
0.9725008
9.999980e-01
Chromosome 14
132.95451
27
5.864844e-16
1.172969e-15
Chromosome 15
5.31817
27
0.999998
9.999980e-01
Chromosome 17
170.77268
27
7.837141e-23
2.194399e-22
Chromosome 18
132.95451
27
5.864844e-16
1.172969e-15
Chromosome 19
85.09085
27
6.249833e-08
1.166635e-07
Chromosome 20
59.09085
27
0.0003466411
4.852975e-04
Chromosome 21
191.45451
27
1.037529e-26
3.631351e-26
Chromosome 22
213.31817
27
7.06196e-31
2.824784e-30
Chromosome 23
151.27268
27
3.017813e-19
7.681706e-19
Chromosome 24
213.31817
27
7.06196e-31
2.824784e-30
Chromosome 26
37.81817
27
0.08077971
1.028105e-01
Chromosome 27
9.45451
27
0.9992816
9.999980e-01
Chromosome 28
21.27268
27
0.7733534
9.414737e-01
Chromosome 33
170.77268
27
7.837141e-23
2.194399e-22
Chi-squared (χ2) test: Which of the 13 fatness traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Abdominal fat percentage
32.3901
12
0.001204308
3.131201e-03
Abdominal fat thickness
46.77009
12
5.108914e-06
1.660397e-05
Abdominal fat weight
14.97193
12
0.2429751
2.871524e-01
Carcass fat content
53.29329
12
3.652791e-07
1.582876e-06
Cingular fat width
24.01629
12
0.02023750
4.384792e-02
Fat distribution
12.11053
12
0.4368442
4.732479e-01
Intramuscular fat content
4.31035
12
0.9771629
9.771629e-01
Intramuscular fat percentage
77.9262
12
1.024493e-11
6.659204e-11
Skin fat weight
22.41637
12
0.03310977
6.148957e-02
Subcutaneous fat thickness
120.07578
12
5.968918e-20
7.759593e-19
Subcutaneous neck fat weight
17.75795
12
0.1232401
1.780135e-01
Total white fat weight
19.78561
12
0.07125175
1.157841e-01
Visceral fat weight
15.91653
12
0.1950891
2.536158e-01
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
28
χ2
=
9536.090070
Number of traits:
13
df
=
324
Number of QTLs:
616
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
