Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of egg quality traits:
31
Number of QTL / associations found:
2,866
Number of chromosomes where QTL / associations are found:
31
Chi-squared (χ2) test: are egg quality traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome Z
80.05626
30
1.93916e-06
2.003799e-06
Chromosome 1
962842.27544
30
9e-41
1.116000e-40
Chromosome 2
141.58010
30
2.038780e-16
2.257221e-16
Chromosome 3
36.62805
30
0.1882299
1.882299e-01
Chromosome 4
5980.32098
30
9e-41
1.116000e-40
Chromosome 5
633.08045
30
4.106796e-114
2.546214e-113
Chromosome 6
1068.56256
30
1.676752e-205
1.732644e-204
Chromosome 7
1185.15325
30
3.432591e-230
5.320516e-229
Chromosome 8
217.20894
30
2.847151e-30
3.268951e-30
Chromosome 9
217.20894
30
2.847151e-30
3.268951e-30
Chromosome 10
633.08045
30
4.106796e-114
2.546214e-113
Chromosome 11
1858.64065
30
9e-41
1.116000e-40
Chromosome 12
1349.99606
30
3.396217e-265
1.052827e-263
Chromosome 13
1959.83953
30
9e-41
1.116000e-40
Chromosome 14
1711.87208
30
9e-41
1.116000e-40
Chromosome 15
2391.45997
30
9e-41
1.116000e-40
Chromosome 16
2623.36508
30
9e-41
1.116000e-40
Chromosome 17
2116.66760
30
9e-41
1.116000e-40
Chromosome 18
2506.07131
30
9e-41
1.116000e-40
Chromosome 19
1858.64065
30
9e-41
1.116000e-40
Chromosome 20
2391.45997
30
9e-41
1.116000e-40
Chromosome 21
80.05626
30
1.93916e-06
2.003799e-06
Chromosome 22
2683.01776
30
9e-41
1.116000e-40
Chromosome 23
2170.28458
30
9e-41
1.116000e-40
Chromosome 24
2170.28458
30
9e-41
1.116000e-40
Chromosome 25
2804.33533
30
9e-41
1.116000e-40
Chromosome 26
1908.90467
30
9e-41
1.116000e-40
Chromosome 27
2448.43022
30
9e-41
1.116000e-40
Chromosome 28
2448.43022
30
9e-41
1.116000e-40
Chromosome 30
2804.33533
30
9e-41
1.116000e-40
Chromosome 33
2743.34128
30
9e-41
1.116000e-40
Chi-squared (χ2) test: Which of the 31 egg quality traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Albumen height
202.6294
30
1.593674e-27
3.087743e-27
Albumen percentage
165.29397
30
1.221800e-20
2.104211e-20
Albumen weight
89.78353
30
7.082518e-08
8.782322e-08
Blood and meat spots
690.2677
30
5.243481e-126
2.709132e-125
Egg aftertaste
41.77615
30
0.0747911
7.994911e-02
Egg weight
530.53547
30
6.461187e-93
2.861383e-92
Eggshell biliverdin amount
873.97181
30
1.818344e-164
2.818433e-163
Eggshell color
760.69798
30
1.034947e-140
6.416671e-140
Eggshell color density
24.36286
30
0.7553653
7.805441e-01
Eggshell cuticle coverage
267.78227
30
5.413594e-40
1.525649e-39
Eggshell effective layer thickness
473.38331
30
3.393367e-81
1.314930e-80
Eggshell mammillary density
786.11114
30
4.963533e-146
3.846738e-145
Eggshell mammillary layer thickness
41.77615
30
0.0747911
7.994911e-02
Eggshell percentage
130.35981
30
1.789436e-14
2.641548e-14
Eggshell protoporphyrin amount
218.72656
30
1.468121e-30
3.250839e-30
Eggshell shape
129.157
30
2.874741e-14
4.050771e-14
Eggshell stiffness
198.8806
30
8.020128e-27
1.462494e-26
Eggshell strength
142.43179
30
1.446374e-16
2.359873e-16
Eggshell thickness
351.63478
30
1.478232e-56
5.091688e-56
Eggshell total pigment amount
820.60372
30
2.925806e-153
3.023333e-152
Eggshell weight
70.7294
30
3.874482e-05
4.619575e-05
Haugh units
206.77711
30
2.652018e-28
5.480837e-28
Long length of egg
54.82755
30
0.003712856
4.262909e-03
Short length of egg
126.05088
30
9.72538e-14
1.310812e-13
Specific gravity
14.64984
30
0.9915736
9.915736e-01
Yolk color
104.0687
30
4.184281e-10
5.404696e-10
Yolk height
137.685
30
9.738114e-16
1.509408e-15
Yolk index
262.57139
30
5.578549e-39
1.441125e-38
Yolk number
294.83289
30
2.754779e-45
8.539815e-45
Yolk water content
1281.58455
30
1.176691e-250
3.647742e-249
Yolk weight
219.93956
30
8.6426e-31
2.060928e-30
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
31
χ2
=
1016064.588550
Number of traits:
31
df
=
900
Number of QTLs:
2,866
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
