Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of egg production traits:
7
Number of QTL / associations found:
1,103
Number of chromosomes where QTL / associations are found:
29
Chi-squared (χ2) test: are egg production traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome Z
124.08361
28
4.635446e-14
7.907526e-14
Chromosome 1
3605.47621
28
9e-41
6.525000e-40
Chromosome 2
1206.48164
28
2.384432e-236
6.914853e-235
Chromosome 3
35.89502
28
0.1452905
1.831924e-01
Chromosome 4
35.89502
28
0.1452905
1.831924e-01
Chromosome 5
388.85245
28
3.557798e-65
5.158807e-64
Chromosome 6
0.17157
28
0.998329325823115
9.983293e-01
Chromosome 7
22.40910
28
0.7620088
8.184539e-01
Chromosome 8
124.74364
28
3.565659e-14
6.462757e-14
Chromosome 9
31.26858
28
0.3052842
3.688851e-01
Chromosome 10
114.71012
28
1.849635e-12
2.979968e-12
Chromosome 11
89.35654
28
2.498165e-08
3.622339e-08
Chromosome 12
11.67747
28
0.9971346
9.983293e-01
Chromosome 13
26.65481
28
0.5370985
5.990714e-01
Chromosome 14
177.25953
28
1.261149e-23
2.813332e-23
Chromosome 15
188.86693
28
8.588544e-26
2.264253e-25
Chromosome 16
252.42539
28
5.667066e-38
2.739082e-37
Chromosome 17
36.25048
28
0.1363298
1.831924e-01
Chromosome 18
225.89777
28
7.810144e-33
3.235631e-32
Chromosome 19
134.51067
28
7.063145e-16
1.365541e-15
Chromosome 20
30.93860
28
0.3198138
3.709840e-01
Chromosome 21
200.84246
28
4.748481e-28
1.377059e-27
Chromosome 22
213.18605
28
2.134458e-30
7.737410e-30
Chromosome 23
177.25953
28
1.261149e-23
2.813332e-23
Chromosome 24
166.02019
28
1.501247e-21
3.109726e-21
Chromosome 26
200.84246
28
4.748481e-28
1.377059e-27
Chromosome 27
106.31390
28
4.685424e-11
7.151437e-11
Chromosome 28
2432.51610
28
9e-41
6.525000e-40
Chromosome 33
252.42539
28
5.667066e-38
2.739082e-37
Chi-squared (χ2) test: Which of the 7 egg production traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at first egg
187.61783
6
8.166247e-38
2.858186e-37
Egg number
134.61843
6
1.367732e-26
3.191375e-26
Egg production rate
132.87876
6
3.181534e-26
5.567685e-26
Ovarian follicle weight
15.5899
6
0.01613287
1.613287e-02
Pre-ovulatory follicle number
20.78653
6
0.002003834
2.337806e-03
Qualifying egg number
40.42311
6
3.761078e-07
5.265509e-07
Small yellow follicle number
726.26745
6
1.301734e-153
9.112138e-153
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
29
χ2
=
10613.231230
Number of traits:
7
df
=
168
Number of QTLs:
1,103
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
