Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of milk composition - other traits:
9
Number of QTL / associations found:
127
Number of chromosomes where QTL / associations are found:
22
Chi-squared (χ2) test: are milk composition - other traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome 1
0.08055
21
0.998329325823115
9.983293e-01
Chromosome 2
105.52932
21
2.996727e-13
3.296400e-12
Chromosome 3
22.19076
21
0.3885895
4.499457e-01
Chromosome 6
7046.15931
21
9e-41
1.980000e-39
Chromosome 7
35.51364
21
0.02477879
4.193334e-02
Chromosome 8
0.08055
21
0.998329325823115
9.983293e-01
Chromosome 9
35.51364
21
0.02477879
4.193334e-02
Chromosome 10
35.51364
21
0.02477879
4.193334e-02
Chromosome 11
35.51364
21
0.02477879
4.193334e-02
Chromosome 12
35.51364
21
0.02477879
4.193334e-02
Chromosome 14
35.51364
21
0.02477879
4.193334e-02
Chromosome 15
22.19076
21
0.3885895
4.499457e-01
Chromosome 16
22.19076
21
0.3885895
4.499457e-01
Chromosome 17
35.51364
21
0.02477879
4.193334e-02
Chromosome 18
22.19076
21
0.3885895
4.499457e-01
Chromosome 20
22.19076
21
0.3885895
4.499457e-01
Chromosome 21
35.51364
21
0.02477879
4.193334e-02
Chromosome 24
35.51364
21
0.02477879
4.193334e-02
Chromosome 25
0.93096
21
0.998329325823115
9.983293e-01
Chromosome 26
35.51364
21
0.02477879
4.193334e-02
Chromosome 27
35.51364
21
0.02477879
4.193334e-02
Chromosome 28
22.19076
21
0.3885895
4.499457e-01
Chi-squared (χ2) test: Which of the 9 milk composition - other traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Milk acetone content
107.12503
8
1.482757e-19
1.334481e-18
Milk acidity/alkalinity
10.32268
8
0.2431044
2.734924e-01
Milk beta-hydroxybutyrate content
8.07138
8
0.4265288
4.265288e-01
Milk energy content
14.7945
8
0.06326662
8.134280e-02
Milk freezing point depression
25.80208
8
0.001135400
2.043720e-03
Milk lactose percentage
61.05754
8
2.889547e-10
1.300296e-09
Milk solids percentage
27.98123
8
0.0004778307
1.075119e-03
Milk solids yield
15.53421
8
0.04955344
7.433016e-02
Non-fat milk solids percentage
42.93701
8
9.027496e-07
2.708249e-06
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
22
χ2
=
7676.575290
Number of traits:
9
df
=
168
Number of QTLs:
127
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
