| QTL Map Information |
|---|
| Chromosome: | 22 |
| QTL Peak Location: | 40.86 (cM) |
| QTL Span: | 40.86-40.86 (cM)
27.2-27.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs110616206 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | CNTN3 (contactin 3) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Japanese Black cattle. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina BovineSNP50 BeadChip and analyzed for bovine leukemia virus proviral load. A total of 32,919 SNPs were used for analysis. |
| Analysis: | A linear mixed model was used. |
| Software: | GEMMA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Takeshima SN, Sasaki S, Meripet P, Sugimoto Y, Aida Y |
| Affiliation: | Viral Infectious Diseases Unit, RIKEN, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan |
| Title: | Single nucleotide polymorphisms in the bovine MHC region of Japanese Black cattle are associated with bovine leukemia virus proviral load |
| Journal: | Retrovirology, 2017, 14(1): 24 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | proviral load |
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