Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of fertility traits:
38
Number of QTL / associations found:
31,438
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are fertility traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
3330112.92318
29
9e-41
9.310345e-41
Chromosome 1
6547.74162
29
9e-41
9.310345e-41
Chromosome 2
1628.72750
29
9e-41
9.310345e-41
Chromosome 3
3463.81172
29
9e-41
9.310345e-41
Chromosome 4
188349.29558
29
9e-41
9.310345e-41
Chromosome 5
5289.62736
29
9e-41
9.310345e-41
Chromosome 6
8422.16762
29
9e-41
9.310345e-41
Chromosome 7
10886.92894
29
9e-41
9.310345e-41
Chromosome 8
18327.68842
29
9e-41
9.310345e-41
Chromosome 9
17512.01956
29
9e-41
9.310345e-41
Chromosome 10
15554.07298
29
9e-41
9.310345e-41
Chromosome 11
12364.49776
29
9e-41
9.310345e-41
Chromosome 12
22512.76750
29
9e-41
9.310345e-41
Chromosome 13
11409.65314
29
9e-41
9.310345e-41
Chromosome 14
10649.80552
29
9e-41
9.310345e-41
Chromosome 15
21217.64200
29
9e-41
9.310345e-41
Chromosome 16
19004.09032
29
9e-41
9.310345e-41
Chromosome 17
120651.11948
29
9e-41
9.310345e-41
Chromosome 18
7082.12308
29
9e-41
9.310345e-41
Chromosome 19
8811.02276
29
9e-41
9.310345e-41
Chromosome 20
21217.64200
29
9e-41
9.310345e-41
Chromosome 21
80728.40992
29
9e-41
9.310345e-41
Chromosome 22
25157.67048
29
9e-41
9.310345e-41
Chromosome 23
22856.93616
29
9e-41
9.310345e-41
Chromosome 24
27949.43396
29
9e-41
9.310345e-41
Chromosome 25
44.25176
29
0.03473287
3.473287e-02
Chromosome 26
21944.95554
29
9e-41
9.310345e-41
Chromosome 27
28204.69820
29
9e-41
9.310345e-41
Chromosome 28
28783.28506
29
9e-41
9.310345e-41
Chromosome 29
14116.47674
29
9e-41
9.310345e-41
Chi-squared (χ2) test: Which of the 38 fertility traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at first calving
1221.63203
37
2.071673e-232
3.936179e-231
Age at first conception
138.8651
37
1.049395e-13
1.375069e-13
Age at puberty
18625.892
37
9e-41
1.628571e-40
Age at second calving
135.70398
37
3.432542e-13
4.207632e-13
Antral follicle number
115.50504
37
5.279692e-10
5.732237e-10
Calving ability
1017.55778
37
1.753375e-189
2.220942e-188
Calving ease
9868.71931
37
9e-41
1.628571e-40
Calving interval
367.50269
37
4.890394e-56
3.097250e-55
Calving to conception interval
205.96388
37
2.529397e-25
3.696811e-25
Conception rate
2407.35062
37
9e-41
1.628571e-40
Dystocia
233.74363
37
2.099630e-30
3.324414e-30
Early embryonic survival
278.00043
37
1.042290e-38
1.800319e-38
Fertility index
388.98942
37
2.837434e-60
2.156450e-59
Fertility treatments
96.1233
37
3.73367e-07
3.834580e-07
Fertilization rate
218.99375
37
1.083194e-27
1.646455e-27
First service conception
960.13751
37
1.870689e-177
1.777155e-176
Gestation length
3647.2162
37
9e-41
1.628571e-40
Heat intensity
76.50625
37
0.0001440289
1.440289e-04
Heifer pregnancy
353.58458
37
2.630123e-53
1.249308e-52
Inseminations per conception
8390.33663
37
9e-41
1.628571e-40
Interval from first to last insemination
9123.25875
37
9e-41
1.628571e-40
Interval to first estrus after calving
5800.39183
37
9e-41
1.628571e-40
Luteal activity
17548.02077
37
9e-41
1.628571e-40
Male fertility
132.41518
37
1.166507e-12
1.385227e-12
Non-return rate
21654.61748
37
9e-41
1.628571e-40
Number of degenerate embryos
101.35959
37
6.70837e-08
7.081057e-08
Number of embryos
356.36051
37
7.520706e-54
4.082669e-53
Number of transferable embryos
315.4811
37
6.810179e-46
2.875409e-45
Number of unfertilized ova
151.56013
37
8.270928e-16
1.122483e-15
Offspring number
2035.08306
37
9e-41
1.628571e-40
Ovulation rate
124.94909
37
1.802886e-11
2.014990e-11
Pregnancy loss
131.06008
37
1.9253e-12
2.217012e-12
Pregnancy rate
1396.67625
37
2.099292e-269
7.977310e-268
Reproductive efficiency
198.7141
37
5.106356e-24
7.186723e-24
Sexual precocity
2316.86971
37
9e-41
1.628571e-40
Stayability
135.8694
37
3.226855e-13
4.087350e-13
Stillbirth
3762.78755
37
9e-41
1.628571e-40
Total number of ova
237.66584
37
3.941722e-31
6.512410e-31
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
4110801.485860
Number of traits:
38
df
=
1073
Number of QTLs:
31,438
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
