Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of milk composition - protein traits:
37
Number of QTL / associations found:
26,319
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are milk composition - protein traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
22616.82646
29
9e-41
9.310345e-41
Chromosome 1
271.94741
29
2.695085e-41
9.310345e-41
Chromosome 2
3127.15120
29
9e-41
9.310345e-41
Chromosome 3
1043.54467
29
5.383227e-201
1.614968e-199
Chromosome 4
19576.28930
29
9e-41
9.310345e-41
Chromosome 5
19.13418
29
0.9177985
9.177985e-01
Chromosome 6
2187377.02822
29
9e-41
9.310345e-41
Chromosome 7
7700.50808
29
9e-41
9.310345e-41
Chromosome 8
14946.01310
29
9e-41
9.310345e-41
Chromosome 9
15248.81185
29
9e-41
9.310345e-41
Chromosome 10
7379.54048
29
9e-41
9.310345e-41
Chromosome 11
43167.51964
29
9e-41
9.310345e-41
Chromosome 12
18949.25030
29
9e-41
9.310345e-41
Chromosome 13
4139.75240
29
9e-41
9.310345e-41
Chromosome 14
338657.99671
29
9e-41
9.310345e-41
Chromosome 15
3931.03762
29
9e-41
9.310345e-41
Chromosome 16
4008.67324
29
9e-41
9.310345e-41
Chromosome 17
14398.76904
29
9e-41
9.310345e-41
Chromosome 18
17291.01945
29
9e-41
9.310345e-41
Chromosome 19
9810.43160
29
9e-41
9.310345e-41
Chromosome 20
93343.55153
29
9e-41
9.310345e-41
Chromosome 21
18443.80995
29
9e-41
9.310345e-41
Chromosome 22
16227.70716
29
9e-41
9.310345e-41
Chromosome 23
3828.70450
29
9e-41
9.310345e-41
Chromosome 24
18332.41775
29
9e-41
9.310345e-41
Chromosome 25
17835.32793
29
9e-41
9.310345e-41
Chromosome 26
14251.29222
29
9e-41
9.310345e-41
Chromosome 27
27215.04956
29
9e-41
9.310345e-41
Chromosome 28
23805.66791
29
9e-41
9.310345e-41
Chromosome 29
1954.97714
29
9e-41
9.310345e-41
Chi-squared (χ2) test: Which of the 37 milk composition - protein traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Milk alpha-S1-casein content
65.63037
36
0.001837388
3.399168e-03
Milk alpha-S1-casein percentage
155.33588
36
9.070768e-17
1.974226e-16
Milk alpha-S2-casein percentage
228.21408
36
8.639385e-30
2.458902e-29
Milk alpha-casein content
40.23639
36
0.288131
3.553616e-01
Milk alpha-casein percentage
42.09632
36
0.2238926
2.856561e-01
Milk alpha-casein to beta-casein ratio
4.51541
36
1
1.000000e+00
Milk alpha-lactalbumin content
8.51246
36
0.9999994
1.000000e+00
Milk alpha-lactalbumin percentage
183.93382
36
9.493755e-22
2.195431e-21
Milk beta-casein content
12.59626
36
0.9998966
1.000000e+00
Milk beta-casein percentage
476.941
36
2.142240e-78
3.963144e-77
Milk beta-lactoglobulin percentage
2291.20689
36
9e-41
2.775000e-40
Milk beta-lactoglobulin protein content
2379.62943
36
9e-41
2.775000e-40
Milk casein content
60.29444
36
0.00678569
1.046127e-02
Milk casein index
154.42055
36
1.298569e-16
2.669281e-16
Milk casein percentage
828.28579
36
1.25507e-150
4.643759e-149
Milk casein yield
63.20131
36
0.003373685
5.673925e-03
Milk delta-9-desaturase content
288.15427
36
4.238591e-41
2.775000e-40
Milk energy yield
59.85055
36
0.007528244
1.114180e-02
Milk glycosylated kappa-casein percentage
2004.67826
36
9e-41
2.775000e-40
Milk immunoglobulin G content
35.55415
36
0.4896334
5.844012e-01
Milk kappa-casein content
48.05076
36
0.086346
1.141001e-01
Milk kappa-casein percentage
2828.05345
36
9e-41
2.775000e-40
Milk lactoferrin content
2230.98835
36
9e-41
2.775000e-40
Milk lactoperoxidase content
54.98077
36
0.02229092
3.172169e-02
Milk osteopontin content
4.51541
36
1
1.000000e+00
Milk phosphorylated alpha-S2-casein percentage
447.23374
36
2.03753e-72
2.512954e-71
Milk protein content
61.46254
36
0.005144155
8.275380e-03
Milk protein percentage
5459.35097
36
9e-41
2.775000e-40
Milk protein yield
2363.54607
36
9e-41
2.775000e-40
Milk protein yield persistency
49.87934
36
0.06185948
8.477040e-02
Milk protein-to-fat ratio
78.5636
36
5.29323e-05
1.030787e-04
Milk unglycosylated kappa-casein percentage
2097.15661
36
9e-41
2.775000e-40
Milk urea nitrogen content
200.45403
36
1.040684e-24
2.750379e-24
Milk urea nitrogen yield
199.16353
36
1.780008e-24
4.390686e-24
Milk whey protein content
64.66383
36
0.002345796
4.133069e-03
Milk whey protein percentage
22.22571
36
0.9650477
1.000000e+00
Milk whey protein yield
2.2577
36
1
1.000000e+00
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
2968899.750600
Number of traits:
37
df
=
1044
Number of QTLs:
26,319
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
